Publikační činnost 1. Vědecké monografie Neustupa J, Škaloud P, Peksa O, Kubátová A, Soldán Z, Černá K, Prášil K, Bukovská P, Vojta J, Pažutová M, Veselá J & Škaloudová M (2009): The biological soil crusts in Central European ecosystems, with special reference to taxonomic structure and ecology of the surface crusts at Czech ore-waste and ash-slag sedimentation basins Karolinum, Praha, ISBN 978-80-246-1644-5 2. Kapitoly v monografiích Eliáš M, Amaral R, Fawley KP, Fawley MW, Němcová Y, Neustupa J, Přibyl P, Santos LMA, Ševčíková T (2017): Eustigmatophyceae. In: Archibald JM et al. (eds.). Handbook of Protists. Springer, Cham, Switzerland, pp. 1-39. ISBN 331928147X Neustupa J. (2015): Chlorophyta (excl. Ulvophyceae). In: Frey W (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae. Schweizerbart Verl., Stuttgart, pp. 191-246. ISBN 978-3-443-01083-6 Neustupa J. (2015): Streptophyta p.p. (excl. Charophyceae). In: Frey W (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae. Schweizerbart Verl., Stuttgart, pp. 282-293. ISBN 978-3-443-01083-6 Neustupa J. (2015): Trentepohliales. In: Frey W (ed.), Syllabus of Plant Families, Part 2/1, Photoautotrophic eukaryotic Algae, Schweizerbart Verl., Stuttgart, pp. 261-264. ISBN 978-3-443-01083-6 Neustupa J & Škaloud P (2004): Contribution to the knowledge of soil algae of two abandoned industrial sedimentation basins in Eastern Bohemia. In: Kovář P (ed.) Natural recovery of man-made deposits in landscape (Biotic interactions and ore/ash-slag artificial ecosystems). Academia, Praha, p. 188-192. Němcová Y, Kalina T & Neustupa J (2001): Chrysomonády a slunivky s křemitými šupinami montánních a subalpinských rašelinišť Krkonoš. In: Štursa J et al. (eds.) Geoekologické problémy Krkonoš. KRNAP, Vrchlabí, p. 334-341. Němcová Y, Kalina T, Neustupa J & Nováková S (1999): Chrysomonády s křemitými šupinami v České republica II. Krkonoše. In: Řasy a prostředí. Algologická sekce ČBS, p. 8-10. 3. Původní práce v časopisech a recenzovaných sbornících Procházková K, Němcová Y & Neustupa J (2018): Phyllosiphon duini sp. nov. (Trebouxiophyceae, Chlorophyta), a species isolated from a corticolous phototrophic biofilm - Cryptogamie Algologie 39: 23-34. IF = 1.511 Neustupa J (2017): Asymmetry and integration of cellular morphology in Micrasterias compereana - BMC Evolutionary Biology 17: 1. IF = 3.221 Štifterová A & Neustupa J (2017): Small-scale variation of corticolous microalgal covers: Effects of microhabitat, season, and space - Phycological Research 65: 299-311. IF = 1.338 Mutinová PT, Neustupa J, Bevilacqua S & Terlizzi A (2016): Host specificity of epiphytic diatom (Bacillariophyceae) and desmid (Desmidiales) communities - Aquatic Ecology 50: 697-709. IF = 1.500 Němcová Y, Pusztai M, Škaloudová M & Neustupa J (2016): Silica-scaled chrysophytes (Stramenopiles, Ochrophyta) along a salinity gradient: a case study from the Gulf of Bothnia western shore (northern Europe) - Hydrobiologia 764: 187-197. IF = 2.056
Neustupa J (2016): Static allometry of unicellular green algae: scaling of cellular surface area and volume in the genus Micrasterias (Desmidiales) - Journal of Evolutionary Biology 29: 292-305. IF = 2.792 Poulíčková A, Neustupa J, Hašler P, Tomanec O & Cox EJ (2016): A new species, Navicula lothargeitleri sp. nov., within the Navicula cryptocephala complex (Bacillariophyceae) - Phytotaxa 273: 23-33. IF = 1.240 Procházková K, Němcová Y & Neustupa J (2016): Phyllosiphon ari sp. nov. (Watanabea clade, Trebouxiophyceae), a new parasitic species isolated from leaves of Arum italicum(araceae) - Phytotaxa 283: 143-154. IF = 1.240 Woodard K, Kulichová J, Poláčková T & Neustupa J (2016): Morphometric allometry of representatives of three naviculoid genera throughout their life cycle - Diatom Research 31: 231-242. IF = 1.677 Woodard K & Neustupa J (2016): Morphometric asymmetry of frustule outlines in the pennate diatom Luticola poulickovae (Bacillariophyceae) - Symmetry 8: 150. IF = 1.457 Nováková R & Neustupa J (2015): Microalgal biofilms on common yew needles in relation to anthropogenic air pollution in urban Prague, Czech Republic - Science of the Total Environment 508: 7-12. IF = 3.976 Procházková K, Němcová Y, Kulichová J & Neustupa J (2015): Morphology and phylogeny of parasitic and free-living members of the genus Phyllosiphon (Trebouxiophyceae, Chlorophyta) - Nova Hedwigia 101: 501-518. IF = 0.876 Procházková K, Němcová Y & Neustupa J (2015): A new species Jenufa aeroterrestrica (Chlorophyceae incertae sedis, Viridiplantae), described from Europe - Preslia 87: 403-416. IF = 2.711 Štifterová A & Neustupa J (2015): Community structure of corticolous microalgae within a single forest stand: evaluating the effects of bark surface ph and tree species - Fottea 15: 113-122. IF = 2.026 Kulichová J, Škaloud P & Neustupa J (2014): Molecular diversity of green corticolous microalgae from two submediterranean European localities - European Journal of Phycology 49: 345-355. IF = 1.912 Neustupa J, Šťastný J & Škaloud P (2014): Splitting of Micrasterias fimbriata (Desmidiales, Viridiplantae) into two monophyletic species and description of Micrasterias compereana sp. nov. - Plant Ecology and Evolution 147: 405-411. IF = 0.986 Poulíčková A, Mazalová P, Vašut RJ, Šarhanová P, Neustupa J & Škaloud P (2014): DNA content variation and its significance in the evolution of the genus Micrasterias (Desmidiales, Streptophyta) - PLOS One 9: e86247. IF = 3.234 Varella-Valentová J, Kleisner K, Havlíček J & Neustupa J (2014): Shape differences between the faces of homosexual and heterosexual men. - Archives of Sexual Behavior 43: 353-361. IF = 2.589 Eliáš M, Neustupa J, Pažoutová M & Škaloud P (2013): A case of taxonomic inflation in coccoid algae: Ellipsoidion parvum and Neocystis vischeri are conspecific with Neocystis (= Nephrodiella) brevis (Chlorophyta, Trebouxiophyceae) - Phytotaxa 76: 15-27. IF = 1.376 Němcová Y, Kreidlová J, Pusztai M & Neustupa J (2013): Mallomonas pumilio group (Chrysophyceae/Stramenopiles) - a revision based on the scale/scale-case morphology and analysis of scale shape - Nova Hedwigia Beih 142: 27-49. IF = 0.989 Neustupa J (2013): Patterns of symmetric and asymmetric morphological variation in unicellular green microalgae of the genus Micrasterias (Desmidiales, Viridiplantae) - Fottea 13: 53-63. IF = 1.627 Neustupa J, Němcová Y, Veselá J, Steinová J & Škaloud P (2013): Parachloroidium gen. nov. (Trebouxiophyceae, Chlorophyta), a novel genus of coccoid green algae from subaerial corticolous biofilms - Phycologia 52: 411-421. IF = 1.820 Neustupa J, Němcová Y, Veselá J, Steinová J & Škaloud P (2013): Leptochlorella corticola gen. et sp. nov. and Kalinella apyrenoidosa sp. nov.: two new Chlorella-like green microalgae (Trebouxiophyceae,
Chlorophyta) from subaerial habitats - International Journal of Systematic and Evolutionary Microbiology 63: 377-387. IF = 2.798 Neustupa J & Štifterová A (2013): Distribution patterns of subaerial corticolous microalgae in two European regions - Plant Ecology and Evolution 146: 279-289. IF = 0.960 Neustupa J, Veselá J & Šťastný J (2013): Differential cell size structure of desmids and diatoms in the phytobenthos of peatlands - Hydrobiologia 709: 159-171. IF = 2.212 Poulíčková A, Bergová K, Hnilica R & Neustupa J (2013): Epibryic diatoms from ombrotrophic mires: diversity, gradients and indicating options - Nova Hedwigia 96: 351-365. IF = 0.989 Šťastný J, Škaloud P, Langenbach D, Nemjová K & Neustupa J (2013): Polyphasic evaluation of Xanthidium antilopaeum and X. cristatum (Zygnematophyceae, Streptophyta) species complex - Journal of Phycology 49: 401-416. IF = 2.529 Van de Vijver B, Moravcová A, Kusber WH & Neustupa J (2013): Analysis of the type material of Pinnularia divergentissima (Grunow in Van Heurck) Cleve (Bacillariophyceae) - Fottea 13: 1-14. IF = 1.627 Němcová Y; Kreidlová J, Kosová A & Neustupa J (2012): Lakes and pools of Aquitaine region (France) - a biodiversity hotspot of Synurales in Europe - Nova Hedwigia 95: 1-24. IF = 0.809 Neustupa J; Černá K & Šťastný J (2012): Spatio-temporal community structure of peat bog benthic desmids on a microscale - Aquatic Ecology 46: 229-239. IF = 1.378 Škaloud P, Šťastný J, Nemjová K, Mazalová P, Poulíčková A & Neustupa J (2012): Molecular phylogeny of baculiform desmid taxa (Zygnematophyceae) - Plant Systematics and Evolution 298: 1281-1292. IF = 1.312 Veselá J, Urbánková P, Černá K & Neustupa J (2012): Ecological variation within traditional diatom morphospecies; diversity of Frustulia rhomboides sensu lato (Bacillariophyceae) in European freshwater habitats - Phycologia 51: 552-561. IF = 1.647 Němcová Y, Eliáš M, Škaloud P, Hodač L & Neustupa J (2011): Jenufa gen. nov.: a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing - Journal of Phycology 47: 928-938. IF = 2.071 Nemjová K, Neustupa J; Šťastný J; Škaloud P & Veselá J (2011): Species concept and morphological differentiation of strains traditionally assigned to Micrasterias truncata - Phycological Research 59: 208-220. IF = 1.543 Neustupa J, Černá K, & Šťastný J (2011): The effects of aperiodic desiccation on the diversity of benthic desmid assemblages in a lowland peat bog - Biodiversity and Conservation 20: 1695-1711. IF = 2.238 Neustupa J, Eliáš M, Škaloud P, Němcová Y & Šejnohová L (2011): Xylochloris irregularis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga - Phycologia 50: 57-66. IF = 2.000 Neustupa J, Šťastný J, Nemjová K, Mazalová P, Goodyer E, Poulíčková A & Škaloud P (2011): A novel, combined approach to assessing species delimitation and biogeography within the well-known desmid species Micrasterias fimbriata and M. rotata (Desmidiales, Steptophyta) - Hydrobiologia 667: 223 239. IF = 1.784 Škaloud P, Nemjová K, Veselá J, Černá K & Neustupa J (2011): A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): evidence for the accelerated rate of morphological evolution in protists - Molecular Phylogenetics and Evolution 61: 933-943. IF = 3.609 Černá K & Neustupa J (2010): The ph-related morphological variations of two acidophilic species of Desmidiales (Viridiplantae) isolated from a lowland peat bog, Czech Republic - Aquatic Ecology 44: 409-419. IF = 1.429 Eliáš M, Němcová Y, Škaloud P, Neustupa J, Kaufnerová V & Šejnohová L (2010): Hylodesmus singaporensis gen. et sp. nov., a new autosporic subaerial green alga (Scenedesmaceae, Chlorophyta) from Singapore - International Journal of Systematic and Evolutionary Microbiology 60: 1224-1235. IF = 1.930
Němcová Y, Neustupa J, Kvíderová J & Řezáčová-Škaloudová M (2010): Morphological plasticity of silica scales of Synura echinulata (Synurophyceae) in crossed gradients of light and temperature - a geometric morphometric approach - Nova Hedwigia Beih. 136: 21-32. IF = 0.913 Neustupa J, Řezáčová-Škaloudová M & Němcová Y (2010): Shape variation of the silica-scales of Mallomonas kalinae (Mallomonadales, Synurophyceae) in relation to their position on the cell body - Nova Hedwigia Beih. 136: 33-42. IF = 0.913 Neustupa J & Škaloud P (2010): Diversity of subaerial algae and cyanobacteria growing on bark and wood in the lowland tropical forests of Singapore - Plant Ecology and Evolution 143: 51-62. IF = 1.167 Neustupa J, Škaloud P & Šťastný J (2010): The molecular phylogenetic and geometric morphometric evaluation of Micrasterias crux-melitensis / M. radians species complex Journal of Phycology 46: 703-714. IF = 2.239 Poulíčková A, Veselá J, Neustupa J & Škaloud P (2010): Pseudocryptic diversity versus cosmopolitanism in diatoms: a case study on Navicula cryptocephala Kütz. (Bacillariophyceae) and morphologically similar taxa - Protist 161: 353-369. IF = 3.329 Řezáčová-Škaloudová M, Neustupa J & Němcová Y (2010): Effect of temperature on the variability of silicate structures in Mallomonas kalinae and Synura curtispina (Synurophyceae) - Nova Hedwigia Beih 136: 55-69. IF = 0.913 Savriama Y, Neustupa J & Klingenberg CP (2010): Geometric morphometrics of symmetry and allometry in Micrasterias rotata (Zygnemophyceae, Viridiplantae) - Nova Hedwigia Beih. 136: 43-54. IF = 0.913 Eliáš M & Neustupa J (2009): Pseudomarvania gen. nov. (Chlorophyta, Trebouxiophyceae), a new genus for budding subaerial green algae Marvania aerophytica Neustupa & Šejnohová and Stichococcus ampulliformis Handa - Fottea 9: 169-177. IF = 1.762 Fránková M, Poulíčková A, Neustupa J, Pichrtová M & Marvan P (2009): Geometric morphometrics a sensitive method for diatom morphospecies distinguishing: a case study on the sympatric populations of Reimeria sinuata and Gomphonema tergestinum (Bacillariophyceae) from the River Bečva, Czech Republic - Nova Hedwigia 88: 81-95. IF = 0.763 Machová-Černá K & Neustupa J (2009): Spatial patterns of algal assemblages in a peatbog ditch - International Review of Hydrobiology 94: 40-56. IF = 1.082 Neustupa J, Černá K & Šťastný J (2009): Diversity and morphological disparity of desmid assemblages in Central European peatlands - Hydrobiologia 630: 243-256. IF = 1.754 Neustupa J, Němcová Y, Eliáš M & Škaloud P (2009): Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia - Phycological Research 57: 159-169. IF = 1.246 Poulíčková A, Neustupa J, Špačková J & Škaloud P (2009): Distribution of epipelic diatoms in artificial fishponds along environmental and spatial gradients - Hydrobiologia 624: 81-90. IF = 1.754 Veselá J, Neustupa J, Pichrtová M & Poulíčková A (2009): Morphometric study of Navicula morphospecies (Baccilariophyta) with respect to diatom life cycle - Fottea 9: 307-316. IF = 1.762 Eliáš M, Neustupa J & Škaloud P (2008): Elliptochloris bilobata var. corticola var. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccal green alga - Biologia 63: 787-794. IF = 0.406 Hašler P, Štěpánková J, Špačková J, Neustupa J, Kitner M, Hekera P, Veselá J, Burian J & Poulíčková A (2008): Epipelic cyanobacteria and algae: a case study from Czech ponds - Fottea 8: 133-146. IF = 1.762 Neustupa J & Škaloud P (2008): Diversity of subaerial algae and cyanobacteria on tree bark in tropical mountain habitats - Biologia 63: 802-808. IF = 0.406 Neustupa J, Šťastný J & Hodač J (2008): Temperature-related phenotypic plasticity in the green microalga Micrasterias rotata - Aquatic Microbial Ecology 51: 77-86. IF = 2.190
Neustupa J & Nemjová K (2008): Quantitative assessment of morphological variation of six Pseudococcomyxa strains by geometric morphometric descriptors - Fottea 8: 111-116. IF = 1.762 Šťastný J & Neustupa J (2008): Cosmarium gauthierae sp. nov. (Conjugatophyceae, Desmidiales) from an ephemeral pool in South-West Macedonia. - Cryptogamie Algologie 29: 255-260. IF = 0.667 Neustupa J, Eliáš M & Šejnohová L (2007): A taxonomic study of two Stichococcus species (Trebouxiophyceae, Chlorophyta) with a starch-enveloped pyrenoid - Nova Hedwigia 84: 51-63. IF = 0.775 Neustupa J & Němcová Y (2007): A geometric morphometric study of the variation in scales of Mallomonas striata (Synurophyceae, Heterokontophyta) - Phycologia 46: 123-130. IF = 1.360 Neustupa J & Řezáčová M (2007): The genus Mallomonas (Mallomonadales, Synurophyceae) in several Southeast Asian urban water bodies - the biogeographic implications - Nova Hedwigia 84: 249-259. IF = 0.775 Neustupa J & Škaloud P (2007): Geometric morphometrics and qualitative patterns in the morphological variation of five species of Micrasterias (Zygnemophyceae, Viridiplantae) - Preslia 79: 401-417. IF = 2.119 Řezáčová M & Neustupa J (2007): Distribution of the genus Mallomonas (Synurophyceae) - ubiquitous dispersal in microorganisms evaluated. - Protist 158: 29-37. IF = 3.102 Neustupa J & Šťastný J (2006): The geometric morphometric study of Central European species of the genus Micrasterias (Zygnematophyceae, Viridiplantae) - Preslia 78: 253-263. IF = 1.545 Neustupa J (2005): Phenotypic plasticity of microalgal cultures in culture collections: a geometric morphometric appproach - Oceanol. Hydrobiol. Stud. 34: 97-107. Neustupa J (2005): Investigations on the genus Phycopeltis (Trentepohliaceae, Chlorophyta) from South- East Asia, including the description of two new species - Cryptogamie Algologie 26: 229-242. IF = 0.540 Neustupa J & Hodač L (2005): Changes in shape of the coenobial cells of an experimental strain of Pediastrum duplex var.duplex (Chlorophyta) reared at different phs - Preslia 77: 439-452. IF = 1.545 Škaloud P, Neustupa J, Radochová B & Kubínová L (2005): Confocal microscopy of chloroplast morphology and ontogeny in three strains of Dictyochloropsis (Trebouxiophyceae, Chlorophyta) - Phycologia 44: 261-269. IF = 1.271 Neustupa J (2004): Two new aerophytic species of the genus Podohedra DÜRINGER (Chlorophyceae) Arch. Hydrobiol./Algological Studies 112: 1-16. Nováková S, Němcová Y, Neustupa J, Řezáčová M & Šejnohová L (2004): Silica-scaled chrysophytes in acid peat bogs of Bohemian Switzerland (Czech Republic) and Saxonian Switzerland (Germany) - Nova Hedwigia 78: 507-515. IF = 0.594 Nováková S, Řezáčová M, Němcová Y, Neustupa J & Kalina T (2004): Mallomonas actinoloma var. maramuresensis (Synurophyceae) - a new species in algal flora of the Czech Republic - Novit. Bot. Univ. Carol. 17: 7-10. Řezáčová M, Neustupa J & Šejnohová L (2004): Five species of Mallomonas (Synurophyceae) new to the algal flora of the Czech Republic - Preslia 76: 175-181. IF = 1.545 Stibral K, Komárek S, & Neustupa J (2004): Přírodní estetika Josefa Velenovského Estetika 40: 117-126. Němcová Y, Neustupa J, Nováková S & Kalina T (2003): Silica scaled chrysophytes of the Czech Republic Acta Univ. Carol. 47: 285-346. Neustupa J (2003): The genus Phycopeltis (Trentepohliales, Chlorophyta) in tropical Southeast Asia Nova Hedwigia 76: 487-505. IF = 0.819 Neustupa J & Albrechtová J (2003): Aerial algae on spruce needles in the Krušné Hory Mts., Czech Republic - Czech Phycol. 3: 161 168.
Neustupa J & Šejnohová L (2003): Marvania aerophytica sp. nov. a new aerial tropical green alga Biologia 58: 503-507. IF = 0.183 Šejnohová L, Škaloud P, Neustupa J, Nováková S, Řezáčová M, & Ošlejšková L (2003): Algae and cyanoprokaryotic species from peat bog, streams, ponds and aerial biotopes in the region of South Šumava Mts Czech Phycol. 3: 41 52. Němcová Y, Neustupa J, Kalina T & Nováková S (2002): Silica-scaled chrysophytes of the Šumava National Park and the Třeboňsko UNESCO Biosphere Reserve (Southern Bohemia, Czech Republic) Nordic Journal of Botany 22: 375 393. IF = 0.178 Neustupa J (2002): An easy method for light microscopic distinguishing of xanthophycean and eustigmatophycean strains Czech Phycol. 2: 43 46. Neustupa J, Nováková S, Šejnohová L, Škaloud P & Řezáčová M (2002): Algae from aquatic, peat bog and aerial biotopes in the catchment area of the River Křemelná in Šumava National Park Czech Phycol. 2: 47 61. Němcová Y, Kalina T. & Neustupa J (2001): Chrysomonády a slunivky s křemitými šupinami alpinských a subalpinských rašelinišť Krkonoš - Opera Corcontica 37: 334 341. Němcová Y, Kalina T, Neustupa J & Nováková S (2001): Silica-scaled chrysophytes of the Krkonoše Mountains (Czech Republic) - Algological Studies 101: 97 108. Neustupa J (2001): Soil algae from marlstone-substratum based biotopes in the Nature park Džbán (Central Bohemia, Czech Republic) with special attention to the natural treeless localities Arch. Hydrobiol./Algological Studies 101: 109 120. Neustupa J & Němcová Y (2001): Morphological and taxonomic study of three terrestrial eustigmatophycean species - Nova Hedwigia Beih. 123: 373 386. Neustupa J, Němcová Y & Kalina T (2001): Silica-scaled Chrysophytes of Southern Bohemia and Českomoravská vrchovina (Czech-Moravian Highlands, Czech Republic) - Algological Studies 102: 23 34. Neustupa J, Němcová Y & Kalina T (2001): Mallomonas pumilio var. pumilio a new species in algal flora of Czech Republic Novit. Bot. Univ. Carol. 13: 9 11. Kalina T, Němcová Y & Neustupa J (2000): Silica-scaled chrysophytes of the Czech Republic 1. District Česká Lípa (Northern Bohemia) and part of the Central Bohemia Arch. Hydrobiol./Algological Studies 96: 29-47. Němcová Y, Kalina T, Neustupa J & Nováková S (2000): Scale-bearing chrysophyte Mallomonas calceolus Bradley a new record from Czech Republic - Novit. Bot. Univ. Carol. 13: 7-11. Neustupa J (1998): Prasiola crispa (Lightfoot) Meneghini in King`s preserve in Prague - Novit. Bot. Univ. Carol. 12: 35-39. 4. Učebnice a učební texty Prášil K, Nováková S, Neustupa J, Kubátová A, Peksa O & Soldán Z (2004): Praktická cvičení z kryptogamologie. Multimediální výukový materiál. UK v Praze, PřF. 5. Různé závažné práce Neustupa J, Kristiansen J & Němcová Y (2013): Chrysophytes and related organisms: new insights into diversity and evolution (eds.), Proceedings of the 8 th International Chrysophyte Symposium Schweizerbart Verl., Stuttgart, ISBN 978-3-443-51064-0
posudky vědeckých manuskriptů pro následující odborná periodika s impakt faktorem: Annals of Botany; American Journal of Botany; Hydrobiologia; Protist; Journal of Phycology; Planta; Phycological Research; Phycologia; Preslia; Nova Hedwigia; BMC Evolutionary Biology; Diatom Research; Biologia; European Journal of Phycology; Cryptogamie Algologie; Algological Studies; Fottea; Plant Ecology and Evolution; Limnologica; Applied Sciences; Biological Journal of the Linnean Society; Geobiology; Geomicrobiology; Plos ONE; AIMS Environmental Science; Brazilian Journal of Botany; Nordic Journal of Botany; New Zealand Journal of Botany; Phytotaxa celkem dosud 146 vypracovaných posudků 6. Přednášky typu "invited speaker" Variation and asymmetry of segment shapes in marine green algae Halimeda tuna (Chlorophyta, Ulvophyceae). 5 th Biological Shape Analysis Symposium, Graduate School of Agriculture and Life Science, University of Tokyo, 2017 Growth and shape; morphospaces and allometric spaces. Faculty of Science, University of Ostrava, 2015. Complex symmetric patterns of the desmids (Desmidiales, Streptophyta): Quantitative morphometrics at the cellular level. EuroEvoDevo, 5 th Meeting of the European Society for Evolutionary Developmental Biology, University of Vienna, 2014. Adolf Pascher's correspondence. Introduction of the web project. 8 th International Chrysophyte Symposium, Prague, 2012. Patterns of morphological integration in scales of Synura macracantha and S. petersenii concur with their different evolutionary age. 8 th International Chrysophyte Symposium, Prague, 2012. Species concepts and biogeography of Micrasterias (Desmidiales). How old drawings corroborate the molecular data. 5 th European Phycological Congress, Rhodes, Greece, 2011 What is and what is not Ettlia KOMÁREK? On the taxonomy of several trebouxiophycean algae. Seminar on the occasion of Prof. Jiří Komárek's 80 th birthday. Institute of Botany, Academy of Science, Třeboň, 2011. Morphological disparity of protistan assemblages the case study of benthic desmids in temperate peatlands. 6 th National Symposium on Morphometry and Shape Evolution, CNRS, Montpellier, 2009. How many subaerial algae are there in the rainforest? Singapore Botanical Gardens, 2008. Size and shape relation in algal morphometrics the environmental correlates and the patterns of allometry. 8 th International Chrysophyte Symposium, New London, Connecticut, 2008. Geometrics morphometrics new perspectives in algal form analysis. Albrecht-von-Haller Institute of Plant Sciences, University of Göttingen, 2006. The development of algal cultivation and culture collections tracing of the living legacy in Central European culture collections. BALTDER The Fifth Framework Programme Centre of Excellence for Baltic Development, Education and Research, Institute of Oceanography, University of Gdańsk, 2004. Collection of Algae of Charles University of Prague (CAUP) - recent activities. BALTDER The Fifth Framework Programme Centre of Excellence for Baltic Development, Education and Research, Institute of Oceanography, University of Gdańsk, 2004. Geometric morphometrics. Center of Machine Perception (CMP), ČVUT, Praha, 2004. Algae on living leaves - a microcosmos of biodiversity. Institute of Plant Sciences, Karl-Franzens University of Graz, 2003.
7. Přehledy a souborné referáty 8. Patenty národní a zahraniční, objevy 9. Disertační, rigorózní práce, habilitační práce disertační práce - Studies on taxonomy of aero-terrestrial algae, studijní program Botanika, PřF UK, 2003 habilitační práce - Form and shape in phycology from morphology to geometric morphometrics, PřF UK, 2007 10. Účast na řešení grantů 2017-2018, OP VVV, Zvýšení kvality vzdělávání na UK a jeho relevance pro potřeby trhu práce, odborní pracovník, garant připravovaného SP Evoluční biologie 2012-2016, GAČR, Integrated taxonomic and diversity research of subaerial epiphytic green algae in the Mediterranean ecosystems, hlavní řešitel 2011-2013, EU 7th Framework Programme, Development of an innovative, completely automated antifouling test system for professional examinations of marine coatings, spoluřešitel projektu, odborný pracovník 2009-2011, GAČR, Cryptic and pseudocryptic species differentiation in desmids (Desmidiales, Viridiplantae), hlavní řešitel 2009-2011, GAAV, Morphological disparity and temperature-related plasticity of desmids (Desmidiales), hlavní řešitel 2007-2009, GAČR, Diversity, ecological preferences and reproductive biology of freshwater epipelic diatoms, spoluřešitel 2006-2008, GAČR, Integrovaný výzkum biodiverzity a taxonomie aerofytických zelených řas v ekosystémech tropického deštného lesa, hlavní řešitel 2006-2008, GAUK, Ekologie krásivek v NPR Břehyně Pecopala, spoluřešitel 2006-2008, GAUK, Prostorová heterogenita společenstev sladkovodních nárostových sinic a řas, spoluřešitel 2005-2007, MŽP, Ekologická rozhraní: interakce živého a neživého v povrchových mikroekosystémech půd a antropogenních substrátů, spoluřešitel 2005-2007, GAČR, Metody geometrické morfometriky při studiu ekologie zelených řas ve sladkovodních a terestrických ekosystémech, hlavní řešitel 2004-2005, EU 5th Framework Programme, project BALTDER (The Fifth EC Framework Programme Centre of Excellence for Baltic Development, Education and Research), work package Culture collection of Baltic algae CCBA, odborný konzultant 2003, FRVŠ, Aplikace multimediálních prostředků v bakalářské výuce botaniky, spoluřešitel 2003, FRVŠ, Aplikace konfokální mikroskopie ve výzkumu chloroplastu zelených řas, hlavní řešitel 2002, FRVŠ, Inovace praktické výuky algologických předmětů, hlavní řešitel 2002, FRVŠ, Taxonomické a ekologické studie zajímavých řas aluviálních tůní Vltavského luhu, hlavní řešitel
2002-2003, GAUK, Aerofytické epifylní řasy v ekosystémech tropického deštného lesa JV Asie, hlavní řešitel 2000-2002, GAUK, Eustigmatophyceae a Xanthophyceae na terestrických biotopech, hlavní řešitel 1998-2000, GAČR, Silica-scaled chrysophytes of Czech Republic, člen týmu projekty GAUK v roli garanta: 2014-2015, Hostitelská specifita, ekologické strategie a druhová diverzita řas rodu Phyllosiphon (Trebouxiophyceae, Chlorophyta) 2013-2014, Autotrofní mikrobiální nárosty na jehlicích nahosemenných dřevin ve vztahu ke znečištění ovzduší 2011-2012, Struktura společenstev kortikolních řas v mikroměřítku 2006-2008, Fenotypová a genotypová variabilita vybraných zástupců penátních rozsivek (Bacillariophyceae) 11. Ostatní publikace Stibral K & Neustupa J (2007): Krajina dvakrát ničená - Ekolist 17(2): 8. Neustupa J (2006): Co je to geometrická morfometrika aneb morfologie znovu na scéně - Živa 54(2): 54-56. Neustupa J (2006): Nové informace o kvalitě české přírodovědy - Živa 54(1): 14. Neustupa J. (2006): Strana zelených jako noví lidovci české politiky - Britské Listy, 13.2.2006 Neustupa J. (2006): Zelení po volbách - Britské Listy, 6.6.2006 Neustupa J. (2005): Expedice Titiwangsa - Lidé a Země 55(6): 85-90. Neustupa J. (2005): Palmový olej není ekologickou alternativou fosilním palivům - Ekolist 15(8-9): 12-13. Neustupa J. (2004): Oprava, správa a ochrana přírody - Ekolist 14(8-9): 8-10. Neustupa J. (2004): Mlžné tropické lesy - Lidé a Země 53(8): 76-79. Neustupa J. (2004): Evoluce podle Margulisové - Ekolist 14(7): 14-15. Neustupa J. (2004): Krásivky - mikroskopické skvosty našich vod - Živa 52(1): 12-14. Neustupa J & Stejskal L (2004): Lesy z Pána prstenů - Ekolist 14(3): 6-7. Stibral K & Neustupa J (2004): Kosmopolitní Melaka - Lidé a Země 53(1): 32-35. Neustupa J. (2003): Šupinaté zlativky bičíkovci ve skleněném brnění - Živa 51(2): 57-58. Neustupa J. (2003): Soumrak indonéských pralesů - Ekolist 13(6): 4-5. Neustupa J. (2003): Severní Celebes - Ekolist 13(12): 12-15. Neustupa J. (2003): Warugy - uctívané hrobky - Lidé a Země 52(8): 60-61. Stibral K & Neustupa J. (2003): Recenze - Westbroek, P. Život jako geologická síla - Ekolist 13(8-9): 20-21. Neustupa J. (2002): Recenze - Primack, J. et al. Biologické principy ochrany přírody - Ekolist 12(11): 15. Neustupa J. (2001): Stěhujte se banka to platí - Ekolist 11(1): 6-7. Neustupa J & Stibral K (2001): V tropických pralesech Malajského poloostrova - Lidé a Země 50(10): 608-613. Neustupa J. (2000): Jihovýchodní Afrika pod vodou - Ekolist 10(4): 9. Neustupa J. (2000): Zvítězí prales, nebo dálnice? - Ekolist 10(5): 5. Neustupa J. (2000): Tropické pralesy v ohrožení - Ekolist 10(11): 12-13. Neustupa J. (1998): Zbaví se Malajsie svých pralesů? - Ekolist 8(10): 8-9.